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20th IEEE International Parallel & Distributed
Processing Symposium
April 25-29, 2006
Rhodes Island, Greece
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Technical Committee on
Parallel Processing |
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Workshop on High Performance Computational Biology - HiCOMB
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Workshop Introduction - HiCOMB
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Bio-Sequence Database Scanning on a GPU
Weiguo Liu, Bertil Schmidt, Gerrit Voss, Andre Schroder, Wolfgang Muller-wittig
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Some Initial Results on Hardware BLAST Acceleration with a Reconfigurable Architecture
Euripides Sotiriades, Christos Kozanitis, Apostolos Dollas
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Phylospaces: Reconstructing Evolutionary Trees in Tuple Space
Marc L. Smith, Tiffani L. Williams
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Parallel Implementation of a Quartet-Based Algorithm for Phylogenetic Analysis
B. B. Zhou, D. Chu, M. Tarawneh, P. Wang, C. Wang, A. Y. Zomaya, R. P. Brent
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Phylogenetic Models of Rate Heterogeneity: A High Performance Computing Perspective
Alexandros Stamatakis
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Parallel Multiple Sequence Alignment with Local Phylogeny Search by Simulated Annealing
Jaroslaw Zola, Denis Trystram, Andrei Tchernykh, Carlos Brizuela
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MT-ClustalW: Multithreading Multiple Sequence Alignment
Kridsadakorn Chaichoompu, Surin Kittitornkun, Sissades Tongsima
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Parallel Implementation of the Replica Exchange Molecular Dynamics Algorithm on Blue Gene/L
M. Eleftheriou, A. Rayshubski, J. W. Pitera, B. G. Fitch, R. Zhou, R. S. Germain
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Application Re-Structuring and Data Management on a GRID Environment: a Case Study for Bioinformatics
Giovanni Ciriello, Matteo Comin, Concettina Guerra
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A Method to Improve Structural Modeling Based on Conserved Domain Clusters
Fa Zhang, Lin Xu, Bo Yuan
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An Experimental Study of Optimizing Bioinformatics Applications
Guangming Tan, Lin Xu, Shengzhong Feng, Ninghui Sun
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