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Workshop on High Performance Computational Biology - HiCOMB
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Workshop Introduction - HiCOMB
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On the Path to Enable Multi-scale Biomolecular Simulations on PetaFLOPS Supercomputer with Multi-core Processors
Sadaf R. Alam and Pratul K. Agarwal
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Analysis of a Computational Biology Simulation Technique on Emerging Processing Architectures
Jeremy S. Meredith, Sadaf R. Alam and Jeffrey S. Vetter
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A Graph-Theoretic Analysis of the Human Protein-Interaction Network Using Multicore Parallel Algorithms
David A. Bader and Kamesh Madduri
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Biomolecular Path Sampling Enabled by Processing in Network Storage
Paul Brenner, Justin Wozniak, Doug Thain, Aaron Striegel, Jeff Peng and Jesus Izaguirre
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Preliminary results in accelerating profile HMM search on FPGAs
Arpith C. Jacob, Joseph M. Lancaster, Jeremy D. Buhler and Roger D. Chamberlain
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High Performance Database Searching with HMMer on FPGAs
Tim Oliver, Leow Yuan Yeow and Bertil Schmidt
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Exploring the Viability of Cell Broadband Engine for Bioinformatics Applications
Vipin Sachdeva, Mike Kistler, Evan Speight and Tzy-hwa Kathy Tzeng
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Data-Driven Time-Parallelization in the AFM Simulation of Proteins
L. Ji, A. Srinivasan, Y. Yu and H. Nymeyer
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RNAVLab: A unified environment for computational RNA structure analysis based on grid computing technology
Michela Taufer, Ming-ying Leung, Kyle L. Johnson and Abel Licon
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An Automated Data Processing Pipeline for Virus Structure Determination at High Resolution
Chen Yu, Dan C. Marinescu, John P. Morrison, Brian C. Clayton and David A. Power
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